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Abstract Plant trait data are used to quantify how plants respond to environmental factors and can act as indicators of ecosystem function. Measured trait values are influenced by genetics, trade‐offs, competition, environmental conditions, and phenology. These interacting effects on traits are poorly characterized across taxa, and for many traits, measurement protocols are not standardized. As a result, ancillary information about growth and measurement conditions can be highly variable, requiring a flexible data structure. In 2007, the TRY initiative was founded as an integrated database of plant trait data, including ancillary attributes relevant to understanding and interpreting the trait values. The TRY database now integrates around 700 original and collective datasets and has become a central resource of plant trait data. These data are provided in a generic long‐table format, where a unique identifier links different trait records and ancillary data measured on the same entity. Due to the high number of trait records, plant taxa, and types of traits and ancillary data released from the TRY database, data preprocessing is necessary but not straightforward. Here, we present the ‘rtry’ R package, specifically designed to support plant trait data exploration and filtering. By integrating a subset of existing R functions essential for preprocessing, ‘rtry’ avoids the need for users to navigate the extensive R ecosystem and provides the functions under a consistent syntax. ‘rtry’ is therefore easy to use even for beginners in R. Notably, ‘rtry’ does not support data retrieval or analysis; rather, it focuses on the preprocessing tasks to optimize data quality. While ‘rtry’ primarily targets TRY data, its utility extends to data from other sources, such as the National Ecological Observatory Network (NEON). The ‘rtry’ package is available on the Comprehensive R Archive Network (CRAN;https://cran.r‐project.org/package=rtry) and the GitHub Wiki (https://github.com/MPI‐BGC‐Functional‐Biogeography/rtry/wiki) along with comprehensive documentation and vignettes describing detailed data preprocessing workflows.more » « less
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Abstract Background and Aims The acquisitive–conservative axis of plant ecological strategies results in a pattern of leaf trait covariation that captures the balance between leaf construction costs and plant growth potential. Studies evaluating trait covariation within species are scarcer, and have mostly dealt with variation in response to environmental gradients. Little work has been published on intraspecific patterns of leaf trait covariation in the absence of strong environmental variation. Methods We analysed covariation of four leaf functional traits [specific leaf area (SLA) leaf dry matter content (LDMC), force to tear (Ft) and leaf nitrogen content (Nm)] in six Poaceae and four Fabaceae species common in the dry Chaco forest of Central Argentina, growing in the field and in a common garden. We compared intraspecific covariation patterns (slopes, correlation and effect size) of leaf functional traits with global interspecific covariation patterns. Additionally, we checked for possible climatic and edaphic factors that could affect the intraspecific covariation pattern. Key Results We found negative correlations for the LDMC–SLA, Ft–SLA, LDMC–Nm and Ft–Nm trait pairs. This intraspecific covariation pattern found both in the field and in the common garden and not explained by climatic or edaphic variation in the field follows the expected acquisitive–conservative axis. At the same time, we found quantitative differences in slopes among different species, and between these intraspecific patterns and the interspecific ones. Many of these differences seem to be idiosyncratic, but some appear consistent among species (e.g. all the intraspecific LDMC–SLA and LDMC–Nm slopes tend to be shallower than the global pattern). Conclusions Our study indicates that the acquisitive–conservative leaf functional trait covariation pattern occurs at the intraspecific level even in the absence of relevant environmental variation in the field. This suggests a high degree of variation–covariation in leaf functional traits not driven by environmental variables.more » « less
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A large body of research shows that biodiversity loss can reduce ecosystem functioning. However, much of the evidence for this relationship is drawn from biodiversity–ecosystem functioning experiments in which biodiversity loss is simulated by randomly assembling communities of varying species diversity, and ecosystem functions are measured. This random assembly has led some ecologists to question the relevance of biodiversity experiments to real-world ecosystems, where community assembly or disassembly may be non-random and influenced by external drivers, such as climate, soil conditions or land use. Here, we compare data from real-world grassland plant communities with data from two of the largest and longest-running grassland biodiversity experiments (the Jena Experiment in Germany and BioDIV in the United States) in terms of their taxonomic, functional and phylogenetic diversity and functional-trait composition. We found that plant communities of biodiversity experiments cover almost all of the multivariate variation of the real-world communities, while also containing community types that are not currently observed in the real world. Moreover, they have greater variance in their compositional features than their real-world counterparts. We then re-analysed a subset of experimental data that included only ecologically realistic communities (that is, those comparable to real-world communities). For 10 out of 12 biodiversity–ecosystem functioning relationships, biodiversity effects did not differ significantly between the full dataset of biodiversity experiments and the ecologically realistic subset of experimental communities. Although we do not provide direct evidence for strong or consistent biodiversity–ecosystem functioning relationships in real-world communities, our results demonstrate that the results of biodiversity experiments are largely insensitive to the exclusion of unrealistic communities and that the conclusions drawn from biodiversity experiments are generally robust.more » « less
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Abstract In a time of rapid global change, the question of what determines patterns in species abundance distribution remains a priority for understanding the complex dynamics of ecosystems. The constrained maximization of information entropy provides a framework for the understanding of such complex systems dynamics by a quantitative analysis of important constraints via predictions using least biased probability distributions. We apply it to over two thousand hectares of Amazonian tree inventories across seven forest types and thirteen functional traits, representing major global axes of plant strategies. Results show that constraints formed by regional relative abundances of genera explain eight times more of local relative abundances than constraints based on directional selection for specific functional traits, although the latter does show clear signals of environmental dependency. These results provide a quantitative insight by inference from large-scale data using cross-disciplinary methods, furthering our understanding of ecological dynamics.more » « less
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Abstract Scientists have known for over a century that resource addition can lead to species loss from plant communities. Recent studies have also shown that resource addition can substantially restructure communities by altering their functional and taxonomic composition—even when species richness remains unchanged. Understanding which aspects of community structure are impacted by different resources and over which timescales will provide insight for management decisions and may also elucidate which measures can act as early warning indicators for subsequent changes in the community. Here, we take advantage of a long‐term factorial experiment to understand how grassland plant communities respond to a decade of nitrogen fertilization (14 g N·m−2·yr−1) and irrigation (25 mm water/week during the growing season). After 10 yr, fertilization and irrigation decreased species richness by 22% and 9%, while functional richness decreased by 31% and 41%. Abundance‐weighted functional distance between treatments and controls increased by 55% and 24%, respectively. We expected that abundance‐weighted measures would shift before presence–absence‐based measures, but found limited evidence for this. Instead, our results suggest that species gains, which can occur quickly because they require the addition of only one individual, may serve as early indicators for subsequent community restructuring in the opposite direction. Overall, both chronic nitrogen fertilization and irrigation tended to have gradual and increasing impacts on community structure, but the magnitude of these effects varied greatly depending on the aspect of community structure investigated. Further study will be needed to determine the extent to which our results can be generalized to other resources or sites in order to develop management strategies to maintain both taxonomic and functional trait diversity in the face of chronic resource changes.more » « less
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